IL_4V9I_121

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UG*CAACAAG

Length

9 nucleotides

Bulged bases

4V9I|1|BA|C|1554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9I_121 not in the Motif Atlas

Homologous match to IL_7RQB_061

Geometric discrepancy: 0.2345

The information below is about IL_7RQB_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52493.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

4V9I|1|BA|U|1527
4V9I|1|BA|G|1528
*
4V9I|1|BA|C|1551
4V9I|1|BA|A|1552
4V9I|1|BA|A|1553
4V9I|1|BA|C|1554
4V9I|1|BA|A|1555
4V9I|1|BA|A|1556
4V9I|1|BA|G|1557

Current chains

Chain BA

23S ribosomal RNA

Nearby chains