IL_4V9I_151

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAG*CGGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9I_151 not in the Motif Atlas

Geometric match to IL_7RQB_088

Geometric discrepancy: 0.2255

The information below is about IL_7RQB_088

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4V9I|1|BA|C|2308
4V9I|1|BA|A|2309
4V9I|1|BA|G|2310
*
4V9I|1|BA|C|2328
4V9I|1|BA|G|2329
4V9I|1|BA|G|2330
4V9I|1|BA|A|2331
4V9I|1|BA|G|2332

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BG

50S ribosomal protein L5

Chain BS

50S ribosomal protein L18