IL_4V9I_164

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

4V9I|1|BA|G|2792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9I_164 not in the Motif Atlas

Homologous match to IL_7RQB_102

Geometric discrepancy: 0.078

The information below is about IL_7RQB_102

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.1

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

4V9I|1|BA|U|2647
4V9I|1|BA|U|2648
4V9I|1|BA|G|2649
4V9I|1|BA|A|2650
4V9I|1|BA|G|2651
*
4V9I|1|BA|C|2786
4V9I|1|BA|A|2787
4V9I|1|BA|A|2788
4V9I|1|BA|G|2789
4V9I|1|BA|A|2790
4V9I|1|BA|U|2791
4V9I|1|BA|G|2792
4V9I|1|BA|A|2793
4V9I|1|BA|G|2794

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L3

Chain BN

50S ribosomal protein L13