IL_4V9I_172

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9I_172 not in the Motif Atlas

Homologous match to IL_7RQB_110

Geometric discrepancy: 0.0813

The information below is about IL_7RQB_110

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_83162.5

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

4V9I|1|BA|U|2856
4V9I|1|BA|G|2857
4V9I|1|BA|U|2858
4V9I|1|BA|A|2859
4V9I|1|BA|A|2860
4V9I|1|BA|G|2861
*
4V9I|1|BA|U|2874
4V9I|1|BA|U|2875
4V9I|1|BA|G|2876
4V9I|1|BA|A|2877
4V9I|1|BA|G|2878

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BR

50S ribosomal protein L17

Chain BT

50S ribosomal protein L19