IL_4V9I_189

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GACAAC*GCUAAUC

Length

13 nucleotides

Bulged bases

4V9I|1|CA|U|168

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9I_189 not in the Motif Atlas

Homologous match to IL_4LFB_009

Geometric discrepancy: 0.0987

The information below is about IL_4LFB_009

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_12745.1

Basepair signature

cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

1

Unit IDs

4V9I|1|CA|G|143
4V9I|1|CA|A|144
4V9I|1|CA|C|145
4V9I|1|CA|A|146
4V9I|1|CA|A|147
4V9I|1|CA|C|148
*
4V9I|1|CA|G|163
4V9I|1|CA|C|164
4V9I|1|CA|U|165
4V9I|1|CA|A|166
4V9I|1|CA|A|167
4V9I|1|CA|U|168
4V9I|1|CA|C|169

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CT

30S Ribosomal protein S20