IL_4V9I_203
3D structure
- PDB id
- 4V9I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UGUAG*UGAGG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V9I_203 not in the Motif Atlas
- Homologous match to IL_4LFB_023
- Geometric discrepancy: 0.0733
- The information below is about IL_4LFB_023
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_05821.1
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
4V9I|1|CA|U|564
4V9I|1|CA|G|565
4V9I|1|CA|U|566
4V9I|1|CA|A|567
4V9I|1|CA|G|568
*
4V9I|1|CA|U|741
4V9I|1|CA|G|742
4V9I|1|CA|A|743
4V9I|1|CA|G|744
4V9I|1|CA|G|745
Current chains
- Chain CA
- 16S ribosomal RNA
Nearby chains
- Chain CH
- 30S Ribosomal protein S8
- Chain CL
- 30S Ribosomal protein S12
- Chain CO
- 30S Ribosomal protein S15
- Chain CQ
- 30S Ribosomal protein S17
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
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