3D structure

PDB id
4V9I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
GGAAUU*AGGAAC
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V9I_210 not in the Motif Atlas
Homologous match to IL_4LFB_030
Geometric discrepancy: 0.0885
The information below is about IL_4LFB_030
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_04668.2
Basepair signature
cWW-cWW-cWW-L-R-L-R-cWW
Number of instances in this motif group
8

Unit IDs

4V9I|1|CA|G|657
4V9I|1|CA|G|658
4V9I|1|CA|A|659
4V9I|1|CA|A|660
4V9I|1|CA|U|661
4V9I|1|CA|U|662
*
4V9I|1|CA|A|696
4V9I|1|CA|G|697
4V9I|1|CA|G|698
4V9I|1|CA|A|699
4V9I|1|CA|A|700
4V9I|1|CA|C|701

Current chains

Chain CA
16S ribosomal RNA

Nearby chains

Chain CF
30S Ribosomal protein S6
Chain CK
30S Ribosomal protein S11
Chain CR
30S Ribosomal protein S18
Chain DD
50S ribosomal protein L2

Coloring options:


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