IL_4V9I_211

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAGUAG*CGCAGAUAC

Length

15 nucleotides

Bulged bases

4V9I|1|CA|A|686

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9I_211 not in the Motif Atlas

Homologous match to IL_4LFB_031

Geometric discrepancy: 0.1196

The information below is about IL_4LFB_031

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_95727.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

1

Unit IDs

4V9I|1|CA|G|667
4V9I|1|CA|A|668
4V9I|1|CA|G|669
4V9I|1|CA|U|670
4V9I|1|CA|A|671
4V9I|1|CA|G|672
*
4V9I|1|CA|C|683
4V9I|1|CA|G|684
4V9I|1|CA|C|685
4V9I|1|CA|A|686
4V9I|1|CA|G|687
4V9I|1|CA|A|688
4V9I|1|CA|U|689
4V9I|1|CA|A|690
4V9I|1|CA|C|691

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CK

30S Ribosomal protein S11

Chain DA

Large subunit ribosomal RNA; LSU rRNA