IL_4V9I_217

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

4V9I|1|CA|C|912

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9I_217 not in the Motif Atlas

Homologous match to IL_5J7L_041

Geometric discrepancy: 0.1216

The information below is about IL_5J7L_041

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

4V9I|1|CA|G|911
4V9I|1|CA|C|912
4V9I|1|CA|A|913
*
4V9I|1|CA|U|1363
4V9I|1|CA|U|1364
4V9I|1|CA|C|1365
4V9I|1|CA|C|1366
4V9I|1|CA|C|1367

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CG

30S Ribosomal protein S7

Chain CI

30S Ribosomal protein S9

Chain CV

Transfer RNA; tRNA

Chain CW

Transfer RNA; tRNA