IL_4V9I_220

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCU*AGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GCU,AGC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9I_220 not in the Motif Atlas

Geometric match to IL_4LFB_061

Geometric discrepancy: 0.1405

The information below is about IL_4LFB_061

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

4V9I|1|CA|G|976
4V9I|1|CA|C|977
4V9I|1|CA|U|978
*
4V9I|1|CA|A|1024
4V9I|1|CA|G|1025
4V9I|1|CA|C|1026

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA