IL_4V9I_223
3D structure
- PDB id
- 4V9I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CUGCAU*AUGG
- Length
- 10 nucleotides
- Bulged bases
- 4V9I|1|CA|C|1037
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V9I_223 not in the Motif Atlas
- Geometric match to IL_4V88_473
- Geometric discrepancy: 0.2989
- The information below is about IL_4V88_473
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_36174.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 15
Unit IDs
4V9I|1|CA|C|1034
4V9I|1|CA|U|1035
4V9I|1|CA|G|1036
4V9I|1|CA|C|1037
4V9I|1|CA|A|1038
4V9I|1|CA|U|1039
*
4V9I|1|CA|A|1186
4V9I|1|CA|U|1187
4V9I|1|CA|G|1188
4V9I|1|CA|G|1189
Current chains
- Chain CA
- 16S ribosomal RNA
Nearby chains
- Chain CC
- 30S Ribosomal protein S3
- Chain CJ
- 30S Ribosomal protein S10
- Chain CN
- 30S Ribosomal protein S14
- Chain CY
- A-SITE tRNA
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