IL_4V9I_224

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GG*UCAGC

Length

7 nucleotides

Bulged bases

4V9I|1|CA|C|1182, 4V9I|1|CA|A|1183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9I_224 not in the Motif Atlas

Homologous match to IL_5J7L_048

Geometric discrepancy: 0.1495

The information below is about IL_5J7L_048

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

4V9I|1|CA|G|1040
4V9I|1|CA|G|1041
*
4V9I|1|CA|U|1181
4V9I|1|CA|C|1182
4V9I|1|CA|A|1183
4V9I|1|CA|G|1184
4V9I|1|CA|C|1185

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CC

30S Ribosomal protein S3

Chain CJ

30S Ribosomal protein S10

Chain CN

30S Ribosomal protein S14