3D structure

PDB id
4V9I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
CCG*CAAG
Length
7 nucleotides
Bulged bases
4V9I|1|CA|C|1383, 4V9I|1|CA|A|1481
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V9I_233 not in the Motif Atlas
Geometric match to IL_4V88_463
Geometric discrepancy: 0.2397
The information below is about IL_4V88_463
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_61438.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
5

Unit IDs

4V9I|1|CA|C|1382
4V9I|1|CA|C|1383
4V9I|1|CA|G|1384
*
4V9I|1|CA|C|1479
4V9I|1|CA|A|1480
4V9I|1|CA|A|1481
4V9I|1|CA|G|1482

Current chains

Chain CA
16S ribosomal RNA

Nearby chains

Chain CV
Transfer RNA; tRNA
Chain CX
mRNA

Coloring options:


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