IL_4V9I_234

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9I_234 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.1173

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4V9I|1|CA|G|1384
4V9I|1|CA|C|1385
4V9I|1|CA|C|1386
4V9I|1|CA|C|1387
*
4V9I|1|CA|G|1475
4V9I|1|CA|U|1476
4V9I|1|CA|A|1477
4V9I|1|CA|A|1478
4V9I|1|CA|C|1479

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CV

Transfer RNA; tRNA

Chain CX

mRNA

Chain DA

Large subunit ribosomal RNA; LSU rRNA