IL_4V9I_236
3D structure
- PDB id
- 4V9I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CAC*GAAG
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V9I_236 not in the Motif Atlas
- Geometric match to IL_3C3Z_002
- Geometric discrepancy: 0.1833
- The information below is about IL_3C3Z_002
- Detailed Annotation
- Decoding loop related
- Broad Annotation
- Decoding loop related
- Motif group
- IL_29925.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 10
Unit IDs
4V9I|1|CA|C|1390
4V9I|1|CA|A|1391
4V9I|1|CA|C|1392
*
4V9I|1|CA|G|1469
4V9I|1|CA|A|1470
4V9I|1|CA|A|1471
4V9I|1|CA|G|1472
Current chains
- Chain CA
- 16S ribosomal RNA
Nearby chains
- Chain CL
- 30S Ribosomal protein S12
- Chain CM
- 30S Ribosomal protein S13
- Chain CX
- mRNA
- Chain CY
- A-SITE tRNA
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: