IL_4V9I_246
3D structure
- PDB id
- 4V9I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GAG*CUCC
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V9I_246 not in the Motif Atlas
- Geometric match to IL_4V9F_003
- Geometric discrepancy: 0.2624
- The information below is about IL_4V9F_003
- Detailed Annotation
- Major groove platform with extra cWW
- Broad Annotation
- Major groove platform
- Motif group
- IL_51387.3
- Basepair signature
- cWW-cSH-cWW-cWW
- Number of instances in this motif group
- 21
Unit IDs
4V9I|1|DA|G|41
4V9I|1|DA|A|42
4V9I|1|DA|G|43
*
4V9I|1|DA|C|459
4V9I|1|DA|U|460
4V9I|1|DA|C|461
4V9I|1|DA|C|462
Current chains
- Chain DA
- 23S ribosomal RNA
Nearby chains
No other chains within 10ÅColoring options: