IL_4V9I_254

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAAU*AUAG

Length

9 nucleotides

Bulged bases

4V9I|1|DA|A|306

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9I_254 not in the Motif Atlas

Homologous match to IL_7RQB_011

Geometric discrepancy: 0.1082

The information below is about IL_7RQB_011

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4V9I|1|DA|C|303
4V9I|1|DA|G|304
4V9I|1|DA|A|305
4V9I|1|DA|A|306
4V9I|1|DA|U|307
*
4V9I|1|DA|A|380
4V9I|1|DA|U|381
4V9I|1|DA|A|382
4V9I|1|DA|G|383

Current chains

Chain DA

23S ribosomal RNA

Nearby chains