IL_4V9I_259

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UUAAG*CGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9I_259 not in the Motif Atlas

Homologous match to IL_4WF9_019

Geometric discrepancy: 0.1025

The information below is about IL_4WF9_019

Detailed Annotation

AAA cross-strand stack

Broad Annotation

AAA cross-strand stack

Motif group

IL_66798.3

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

7

Unit IDs

4V9I|1|DA|U|628
4V9I|1|DA|U|629
4V9I|1|DA|A|630
4V9I|1|DA|A|631
4V9I|1|DA|G|632
*
4V9I|1|DA|C|642
4V9I|1|DA|G|643
4V9I|1|DA|G|644
4V9I|1|DA|A|645
4V9I|1|DA|G|646

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DF

50S ribosomal protein L4

Chain DP

50S ribosomal protein L15