IL_4V9I_277

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGG*CCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9I_277 not in the Motif Atlas

Geometric match to IL_4LFB_061

Geometric discrepancy: 0.1622

The information below is about IL_4LFB_061

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

4V9I|1|DA|G|927
4V9I|1|DA|G|928
4V9I|1|DA|G|929
*
4V9I|1|DA|C|938
4V9I|1|DA|C|939
4V9I|1|DA|U|940

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain CY

A-SITE tRNA

Chain DZ

50S ribosomal protein L25