IL_4V9I_284
3D structure
- PDB id
- 4V9I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GGUAAAG*CGAAAAUGAUCGGGGC
- Length
- 23 nucleotides
- Bulged bases
- 4V9I|1|DA|U|1071, 4V9I|1|DA|A|1172, 4V9I|1|DA|U|1175
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V9I_284 not in the Motif Atlas
- Geometric match to IL_7RQB_040
- Geometric discrepancy: 0.0547
- The information below is about IL_7RQB_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
4V9I|1|DA|G|1069
4V9I|1|DA|G|1070
4V9I|1|DA|U|1071
4V9I|1|DA|A|1072
4V9I|1|DA|A|1073
4V9I|1|DA|A|1074
4V9I|1|DA|G|1075
*
4V9I|1|DA|C|1169
4V9I|1|DA|G|1170
4V9I|1|DA|A|1171
4V9I|1|DA|A|1172
4V9I|1|DA|A|1173
4V9I|1|DA|A|1174
4V9I|1|DA|U|1175
4V9I|1|DA|G|1176
4V9I|1|DA|A|1177
4V9I|1|DA|U|1178
4V9I|1|DA|C|1179
4V9I|1|DA|G|1180
4V9I|1|DA|G|1181
4V9I|1|DA|G|1182
4V9I|1|DA|G|1183
4V9I|1|DA|C|1184
Current chains
- Chain DA
- 23S ribosomal RNA
Nearby chains
- Chain D9
- 50S ribosomal protein L36
- Chain DB
- 5S ribosomal RNA; 5S rRNA
- Chain DE
- 50S ribosomal protein L3
- Chain DN
- 50S ribosomal protein L13
- Chain DQ
- 50S ribosomal protein L16
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