IL_4V9I_293

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

4V9I|1|DA|A|1424

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9I_293 not in the Motif Atlas

Homologous match to IL_7RQB_052

Geometric discrepancy: 0.0538

The information below is about IL_7RQB_052

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

20

Unit IDs

4V9I|1|DA|C|1396
4V9I|1|DA|U|1397
4V9I|1|DA|A|1398
4V9I|1|DA|A|1399
4V9I|1|DA|G|1400
*
4V9I|1|DA|C|1421
4V9I|1|DA|G|1422
4V9I|1|DA|A|1423
4V9I|1|DA|A|1424
4V9I|1|DA|G|1425

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D7

50S ribosomal protein L34

Chain DD

50S ribosomal protein L2