IL_4V9I_314

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGGAG*CGAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9I_314 not in the Motif Atlas

Homologous match to IL_7RQB_075

Geometric discrepancy: 0.1095

The information below is about IL_7RQB_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

4V9I|1|DA|G|1886
4V9I|1|DA|G|1887
4V9I|1|DA|G|1888
4V9I|1|DA|A|1889
4V9I|1|DA|G|1890
*
4V9I|1|DA|C|1903
4V9I|1|DA|G|1904
4V9I|1|DA|A|1905
4V9I|1|DA|A|1906
4V9I|1|DA|C|1907

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain CW

Transfer RNA; tRNA

Chain D1

50S ribosomal protein L28

Chain DC

50S Ribosomal protein L1