IL_4V9I_316

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

4V9I|1|DA|A|1959, 4V9I|1|DA|U|1965, 4V9I|1|DA|U|1984

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9I_316 not in the Motif Atlas

Homologous match to IL_4WF9_077

Geometric discrepancy: 0.1302

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84014.1

Basepair signature

cWW-L-R-cHW-cWW-L-L-tSW-L

Number of instances in this motif group

8

Unit IDs

4V9I|1|DA|C|1955
4V9I|1|DA|G|1956
4V9I|1|DA|A|1957
4V9I|1|DA|A|1958
4V9I|1|DA|A|1959
4V9I|1|DA|U|1960
4V9I|1|DA|U|1961
4V9I|1|DA|C|1962
4V9I|1|DA|C|1963
4V9I|1|DA|U|1964
4V9I|1|DA|U|1965
4V9I|1|DA|G|1966
*
4V9I|1|DA|C|1982
4V9I|1|DA|C|1983
4V9I|1|DA|U|1984
4V9I|1|DA|G|1985

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain CY

A-SITE tRNA

Chain DD

50S ribosomal protein L2