IL_4V9I_325

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9I_325 not in the Motif Atlas

Homologous match to IL_3U4M_003

Geometric discrepancy: 0.2105

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

4V9I|1|DA|G|2145
4V9I|1|DA|G|2146
4V9I|1|DA|A|2147
4V9I|1|DA|G|2148
*
4V9I|1|DA|C|2182
4V9I|1|DA|G|2183
4V9I|1|DA|C|2184
4V9I|1|DA|C|2185
4V9I|1|DA|G|2186
4V9I|1|DA|G|2187
4V9I|1|DA|U|2188
4V9I|1|DA|G|2189
4V9I|1|DA|A|2190
4V9I|1|DA|A|2191
4V9I|1|DA|A|2192
4V9I|1|DA|U|2193
4V9I|1|DA|A|2194
4V9I|1|DA|C|2195

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain CW

Transfer RNA; tRNA

Chain DC

50S Ribosomal protein L1