IL_4V9I_334

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CCGAG*CGGCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9I_334 not in the Motif Atlas

Homologous match to IL_7RQB_095

Geometric discrepancy: 0.2046

The information below is about IL_7RQB_095

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

4V9I|1|DA|C|2477
4V9I|1|DA|C|2478
4V9I|1|DA|G|2479
4V9I|1|DA|A|2480
4V9I|1|DA|G|2481
*
4V9I|1|DA|C|2491
4V9I|1|DA|G|2492
4V9I|1|DA|G|2493
4V9I|1|DA|C|2494
4V9I|1|DA|G|2495

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain CY

A-SITE tRNA

Chain D9

50S ribosomal protein L36

Chain DQ

50S ribosomal protein L16