IL_4V9I_340
3D structure
- PDB id
- 4V9I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UUGAG*CAAGAUGAG
- Length
- 14 nucleotides
- Bulged bases
- 4V9I|1|DA|G|2792
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V9I_340 not in the Motif Atlas
- Homologous match to IL_4WF9_099
- Geometric discrepancy: 0.0903
- The information below is about IL_4WF9_099
- Detailed Annotation
- tSH-tHS-tHW
- Broad Annotation
- tSH-tHS-tHW
- Motif group
- IL_04638.3
- Basepair signature
- cWW-tSH-tHW-tHS-cSH-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
4V9I|1|DA|U|2647
4V9I|1|DA|U|2648
4V9I|1|DA|G|2649
4V9I|1|DA|A|2650
4V9I|1|DA|G|2651
*
4V9I|1|DA|C|2786
4V9I|1|DA|A|2787
4V9I|1|DA|A|2788
4V9I|1|DA|G|2789
4V9I|1|DA|A|2790
4V9I|1|DA|U|2791
4V9I|1|DA|G|2792
4V9I|1|DA|A|2793
4V9I|1|DA|G|2794
Current chains
- Chain DA
- 23S ribosomal RNA
Nearby chains
- Chain DE
- 50S ribosomal protein L3
- Chain DN
- 50S ribosomal protein L13
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