IL_4V9I_345

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

4V9I|1|DA|A|2777

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9I_345 not in the Motif Atlas

Homologous match to IL_5J7L_350

Geometric discrepancy: 0.1286

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V9I|1|DA|G|2749
4V9I|1|DA|A|2750
4V9I|1|DA|U|2751
4V9I|1|DA|A|2752
4V9I|1|DA|A|2753
4V9I|1|DA|C|2754
*
4V9I|1|DA|G|2774
4V9I|1|DA|G|2775
4V9I|1|DA|A|2776
4V9I|1|DA|A|2777
4V9I|1|DA|G|2778
4V9I|1|DA|C|2779

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D9

50S ribosomal protein L36

Chain DH

50S ribosomal protein L6

Chain DN

50S ribosomal protein L13