IL_4V9I_357

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGAAU*GGAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9I_357 not in the Motif Atlas

Homologous match to IL_5J7L_361

Geometric discrepancy: 0.0597

The information below is about IL_5J7L_361

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

4V9I|1|AA|G|673
4V9I|1|AA|G|674
4V9I|1|AA|A|675
4V9I|1|AA|A|676
4V9I|1|AA|U|677
*
4V9I|1|AA|G|713
4V9I|1|AA|G|714
4V9I|1|AA|A|715
4V9I|1|AA|A|716
4V9I|1|AA|C|717

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AF

30S Ribosomal protein S6

Chain AK

30S Ribosomal protein S11

Chain AR

30S Ribosomal protein S18

Chain BD

50S ribosomal protein L2