IL_4V9I_368

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGCUGAC*GGUGGAG

Length

14 nucleotides

Bulged bases

4V9I|1|DA|G|976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9I_368 not in the Motif Atlas

Homologous match to IL_9DFE_024

Geometric discrepancy: 0.1584

The information below is about IL_9DFE_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68243.1

Basepair signature

cWW-L-cWW-cWW-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4V9I|1|DA|C|890
4V9I|1|DA|G|891
4V9I|1|DA|C|892
4V9I|1|DA|U|893
4V9I|1|DA|G|894
4V9I|1|DA|A|895
4V9I|1|DA|C|896
*
4V9I|1|DA|G|972
4V9I|1|DA|G|973
4V9I|1|DA|U|974
4V9I|1|DA|G|975
4V9I|1|DA|G|976
4V9I|1|DA|A|977
4V9I|1|DA|G|978

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D3

50S ribosomal protein L30