IL_4V9J_378

3D structure

PDB id

4V9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate GDPNP-II containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.86 Å

Loop

Sequence

UUUCC*GGUAG

Length

10 nucleotides

Bulged bases

4V9J|1|BA|U|2688, 4V9J|1|BA|U|2689, 4V9J|1|BA|C|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9J_378 not in the Motif Atlas

Homologous match to IL_7A0S_096

Geometric discrepancy: 0.2629

The information below is about IL_7A0S_096

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_82016.1

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

4V9J|1|BA|U|2687
4V9J|1|BA|U|2688
4V9J|1|BA|U|2689
4V9J|1|BA|C|2690
4V9J|1|BA|C|2691
*
4V9J|1|BA|G|2718
4V9J|1|BA|G|2719
4V9J|1|BA|U|2720
4V9J|1|BA|A|2721
4V9J|1|BA|G|2722

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L3

Chain BR

50S ribosomal protein L17

Chain BT

50S ribosomal protein L19