IL_4V9K_182
3D structure
- PDB id
- 4V9K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- UGG*CUG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V9K_182 not in the Motif Atlas
- Geometric match to IL_4WZM_001
- Geometric discrepancy: 0.3049
- The information below is about IL_4WZM_001
- Detailed Annotation
- Isolated cWH basepair
- Broad Annotation
- Isolated cWH basepair
- Motif group
- IL_86319.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 269
Unit IDs
4V9K|1|BB|U|80
4V9K|1|BB|G|81
4V9K|1|BB|G|82
*
4V9K|1|BB|C|94
4V9K|1|BB|U|95
4V9K|1|BB|G|96
Current chains
- Chain BB
- 5S ribosomal RNA
Nearby chains
- Chain B3
- 50S ribosomal protein L30
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BQ
- 50S ribosomal protein L16
- Chain BZ
- 50S ribosomal protein L25
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