IL_4V9K_206
3D structure
- PDB id
- 4V9K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 4V9K|1|CA|A|532, 4V9K|1|CA|U|534
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V9K_206 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.2301
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
4V9K|1|CA|G|515
4V9K|1|CA|U|516
4V9K|1|CA|G|517
4V9K|1|CA|C|518
4V9K|1|CA|C|519
4V9K|1|CA|A|520
4V9K|1|CA|G|521
*
4V9K|1|CA|C|528
4V9K|1|CA|G|529
4V9K|1|CA|G|530
4V9K|1|CA|U|531
4V9K|1|CA|A|532
4V9K|1|CA|A|533
4V9K|1|CA|U|534
4V9K|1|CA|A|535
4V9K|1|CA|C|536
Current chains
- Chain CA
- ribosomal RNA 16S
Nearby chains
- Chain CC
- 30S ribosomal protein S3
- Chain CL
- 30S ribosomal protein S12
- Chain CV
- messenger RNA
- Chain CY
- Elongation factor G
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