IL_4V9L_036

3D structure

PDB id

4V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9L_036 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.1522

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_84044.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

4V9L|1|AA|G|887
4V9L|1|AA|G|888
4V9L|1|AA|A|889
4V9L|1|AA|G|890
4V9L|1|AA|U|891
4V9L|1|AA|A|892
4V9L|1|AA|C|893
4V9L|1|AA|G|894
*
4V9L|1|AA|U|905
4V9L|1|AA|G|906
4V9L|1|AA|A|907
4V9L|1|AA|A|908
4V9L|1|AA|A|909
4V9L|1|AA|C|910

Current chains

Chain AA

ribosomal RNA 16S

Nearby chains

Chain AL

30S ribosomal protein S12