IL_4V9L_081

3D structure

PDB id

4V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAGC*GUGGG

Length

9 nucleotides

Bulged bases

4V9L|1|BA|G|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9L_081 not in the Motif Atlas

Geometric match to IL_3NPQ_006

Geometric discrepancy: 0.2749

The information below is about IL_3NPQ_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96332.5

Basepair signature

cWW-cWW-L-R-L-cWW-L

Number of instances in this motif group

7

Unit IDs

4V9L|1|BA|C|288
4V9L|1|BA|A|289
4V9L|1|BA|G|290
4V9L|1|BA|C|291
*
4V9L|1|BA|G|349
4V9L|1|BA|U|350
4V9L|1|BA|G|351
4V9L|1|BA|G|352
4V9L|1|BA|G|353

Current chains

Chain BA

23S ribosomal RNA

Nearby chains