IL_4V9L_096

3D structure

PDB id

4V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UGUAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9L_096 not in the Motif Atlas

Geometric match to IL_4V9F_033

Geometric discrepancy: 0.1553

The information below is about IL_4V9F_033

Detailed Annotation

5x5 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_38862.4

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4V9L|1|BA|U|858
4V9L|1|BA|G|859
4V9L|1|BA|U|860
4V9L|1|BA|A|861
4V9L|1|BA|G|862
*
4V9L|1|BA|C|915
4V9L|1|BA|G|916
4V9L|1|BA|A|917
4V9L|1|BA|A|918
4V9L|1|BA|G|919

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B0

50S ribosomal protein L27

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BQ

50S ribosomal protein L16