IL_4V9L_106

3D structure

PDB id

4V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CCCCCAAG*CG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9L_106 not in the Motif Atlas

Geometric match to IL_5TBW_049

Geometric discrepancy: 0.2687

The information below is about IL_5TBW_049

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_84902.1

Basepair signature

cWW-L-cWW-L-L-R-cHH

Number of instances in this motif group

2

Unit IDs

4V9L|1|BA|C|1004
4V9L|1|BA|C|1005
4V9L|1|BA|C|1006
4V9L|1|BA|C|1007
4V9L|1|BA|C|1008
4V9L|1|BA|A|1009
4V9L|1|BA|A|1010
4V9L|1|BA|G|1011
*
4V9L|1|BA|C|1150
4V9L|1|BA|G|1151

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BN

50S ribosomal protein L13

Chain BU

50S ribosomal protein L20