IL_4V9L_123

3D structure

PDB id

4V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9L_123 not in the Motif Atlas

Homologous match to IL_7A0S_049

Geometric discrepancy: 0.2938

The information below is about IL_7A0S_049

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

4V9L|1|BA|U|1357
4V9L|1|BA|G|1358
4V9L|1|BA|A|1359
4V9L|1|BA|A|1360
4V9L|1|BA|G|1361
*
4V9L|1|BA|C|1370
4V9L|1|BA|G|1371
4V9L|1|BA|U|1372
4V9L|1|BA|A|1373
4V9L|1|BA|G|1374

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B1

50S ribosomal protein L28

Chain B7

50S ribosomal protein L34

Chain BD

50S ribosomal protein L2