IL_4V9L_177

3D structure

PDB id

4V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CC*GAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9L_177 not in the Motif Atlas

Geometric match to IL_3MXH_005

Geometric discrepancy: 0.3955

The information below is about IL_3MXH_005

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_15052.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

8

Unit IDs

4V9L|1|BB|C|30
4V9L|1|BB|C|31
*
4V9L|1|BB|G|51
4V9L|1|BB|A|52
4V9L|1|BB|A|53
4V9L|1|BB|G|54

Current chains

Chain BB

5S ribosomal RNA

Nearby chains

Chain BG

50S ribosomal protein L5

Chain BS

50S ribosomal protein L18