IL_4V9L_220

3D structure

PDB id

4V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGGG*CUU

Length

7 nucleotides

Bulged bases

4V9L|1|CA|G|926

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9L_220 not in the Motif Atlas

Geometric match to IL_2ET8_003

Geometric discrepancy: 0.3039

The information below is about IL_2ET8_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_55553.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

5

Unit IDs

4V9L|1|CA|G|925
4V9L|1|CA|G|926
4V9L|1|CA|G|927
4V9L|1|CA|G|928
*
4V9L|1|CA|C|1389
4V9L|1|CA|U|1390
4V9L|1|CA|U|1391

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains

Chain CV

messenger RNA

Chain CW

Transfer RNA; tRNA