IL_4V9L_228
3D structure
- PDB id
- 4V9L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- CCG*CGG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary: CCG,CGG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V9L_228 not in the Motif Atlas
- Geometric match to IL_1Y27_001
- Geometric discrepancy: 0.1901
- The information below is about IL_1Y27_001
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
4V9L|1|CA|C|1118
4V9L|1|CA|C|1119
4V9L|1|CA|G|1120
*
4V9L|1|CA|C|1153
4V9L|1|CA|G|1154
4V9L|1|CA|G|1155
Current chains
- Chain CA
- ribosomal RNA 16S
Nearby chains
- Chain CB
- 30S ribosomal protein S2
- Chain CC
- 30S ribosomal protein S3
- Chain CI
- 30S ribosomal protein S9
- Chain CJ
- 30S ribosomal protein S10
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