IL_4V9L_235

3D structure

PDB id

4V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAUG*CUAAUC

Length

10 nucleotides

Bulged bases

4V9L|1|CA|U|1257, 4V9L|1|CA|A|1280, 4V9L|1|CA|U|1281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9L_235 not in the Motif Atlas

Homologous match to IL_4LFB_052

Geometric discrepancy: 0.2342

The information below is about IL_4LFB_052

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.2

Basepair signature

cWW-cSS-L-cWW

Number of instances in this motif group

2

Unit IDs

4V9L|1|CA|G|1255
4V9L|1|CA|A|1256
4V9L|1|CA|U|1257
4V9L|1|CA|G|1258
*
4V9L|1|CA|C|1277
4V9L|1|CA|U|1278
4V9L|1|CA|A|1279
4V9L|1|CA|A|1280
4V9L|1|CA|U|1281
4V9L|1|CA|C|1282

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains

Chain CC

30S ribosomal protein S3

Chain CJ

30S ribosomal protein S10

Chain CN

30S ribosomal protein S14 type Z