IL_4V9L_236

3D structure

PDB id

4V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CCAC*GGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9L_236 not in the Motif Atlas

Geometric match to IL_4V88_471

Geometric discrepancy: 0.2968

The information below is about IL_4V88_471

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

4V9L|1|CA|C|1259
4V9L|1|CA|C|1260
4V9L|1|CA|A|1261
4V9L|1|CA|C|1262
*
4V9L|1|CA|G|1273
4V9L|1|CA|G|1274
4V9L|1|CA|A|1275
4V9L|1|CA|G|1276

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains