IL_4V9L_238
3D structure
- PDB id
- 4V9L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- CCG*CAAG
- Length
- 7 nucleotides
- Bulged bases
- 4V9L|1|CA|C|1400, 4V9L|1|CA|A|1503
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V9L_238 not in the Motif Atlas
- Geometric match to IL_4V88_463
- Geometric discrepancy: 0.3414
- The information below is about IL_4V88_463
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_61438.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
4V9L|1|CA|C|1399
4V9L|1|CA|C|1400
4V9L|1|CA|G|1401
*
4V9L|1|CA|C|1501
4V9L|1|CA|A|1502
4V9L|1|CA|A|1503
4V9L|1|CA|G|1504
Current chains
- Chain CA
- ribosomal RNA 16S
Nearby chains
- Chain CM
- 30S ribosomal protein S13
- Chain CV
- messenger RNA
- Chain CW
- Transfer RNA; tRNA
- Chain CY
- Elongation factor G
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