IL_4V9L_266

3D structure

PDB id

4V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAAC*GAGUGAAAUAGAGC

Length

18 nucleotides

Bulged bases

4V9L|1|DA|U|504, 4V9L|1|DA|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9L_266 not in the Motif Atlas

Homologous match to IL_7RQB_014

Geometric discrepancy: 0.149

The information below is about IL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.6

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

4V9L|1|DA|G|481
4V9L|1|DA|A|482
4V9L|1|DA|A|483
4V9L|1|DA|C|484
*
4V9L|1|DA|G|496
4V9L|1|DA|A|497
4V9L|1|DA|G|498
4V9L|1|DA|U|499
4V9L|1|DA|G|500
4V9L|1|DA|A|501
4V9L|1|DA|A|502
4V9L|1|DA|A|503
4V9L|1|DA|U|504
4V9L|1|DA|A|505
4V9L|1|DA|G|506
4V9L|1|DA|A|507
4V9L|1|DA|G|508
4V9L|1|DA|C|509

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DW

50S ribosomal protein L22

Chain DY

50S ribosomal protein L24