3D structure

PDB id
4V9L (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.
Experimental method
X-RAY DIFFRACTION
Resolution
3.5 Å

Loop

Sequence
UAG*CAGG
Length
7 nucleotides
Bulged bases
4V9L|1|DA|G|1559
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V9L_309 not in the Motif Atlas
Homologous match to IL_7A0S_052
Geometric discrepancy: 0.3565
The information below is about IL_7A0S_052
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_14688.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
5

Unit IDs

4V9L|1|DA|U|1433
4V9L|1|DA|A|1434
4V9L|1|DA|G|1435
*
4V9L|1|DA|C|1557
4V9L|1|DA|A|1558
4V9L|1|DA|G|1559
4V9L|1|DA|G|1560

Current chains

Chain DA
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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