IL_4V9L_333

3D structure

PDB id

4V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAG*CGGG

Length

7 nucleotides

Bulged bases

4V9L|1|DA|G|2238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9L_333 not in the Motif Atlas

Homologous match to IL_7RQB_082

Geometric discrepancy: 0.1307

The information below is about IL_7RQB_082

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4V9L|1|DA|C|2081
4V9L|1|DA|A|2082
4V9L|1|DA|G|2083
*
4V9L|1|DA|C|2236
4V9L|1|DA|G|2237
4V9L|1|DA|G|2238
4V9L|1|DA|G|2239

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain CW

Transfer RNA; tRNA

Chain D1

50S ribosomal protein L28

Chain DD

50S ribosomal protein L2