IL_4V9L_388
3D structure
- PDB id
- 4V9L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- UUGAG*CAAGAUGAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V9L_388 not in the Motif Atlas
- Homologous match to IL_9DFE_101
- Geometric discrepancy: 0.1759
- The information below is about IL_9DFE_101
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04638.4
- Basepair signature
- cWW-tSH-tHW-tHS-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
4V9L|1|DA|U|2636
4V9L|1|DA|U|2637
4V9L|1|DA|G|2638
4V9L|1|DA|A|2639
4V9L|1|DA|G|2640
*
4V9L|1|DA|C|2774
4V9L|1|DA|A|2775
4V9L|1|DA|A|2776
4V9L|1|DA|G|2777
4V9L|1|DA|A|2778
4V9L|1|DA|U|2779
4V9L|1|DA|G|2780
4V9L|1|DA|A|2781
4V9L|1|DA|G|2782
Current chains
- Chain DA
- 23S ribosomal RNA
Nearby chains
- Chain DE
- 50S ribosomal protein L3
- Chain DN
- 50S ribosomal protein L13
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