IL_4V9M_220

3D structure

PDB id

4V9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Ribosome translocation intermediate FA-4.2A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

4 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9M_220 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.1393

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_84044.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

4V9M|1|CA|G|887
4V9M|1|CA|G|888
4V9M|1|CA|A|889
4V9M|1|CA|G|890
4V9M|1|CA|U|891
4V9M|1|CA|A|892
4V9M|1|CA|C|893
4V9M|1|CA|G|894
*
4V9M|1|CA|U|905
4V9M|1|CA|G|906
4V9M|1|CA|A|907
4V9M|1|CA|A|908
4V9M|1|CA|A|909
4V9M|1|CA|C|910

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains

Chain CL

30S ribosomal protein S12