IL_4V9N_115

3D structure

PDB id

4V9N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GCAAUG*CAGC

Length

10 nucleotides

Bulged bases

4V9N|1|BA|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9N_115 not in the Motif Atlas

Geometric match to IL_4V88_408

Geometric discrepancy: 0.382

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

4V9N|1|BA|G|1319
4V9N|1|BA|C|1320
4V9N|1|BA|A|1321
4V9N|1|BA|A|1322
4V9N|1|BA|U|1323
4V9N|1|BA|G|1324
*
4V9N|1|BA|C|1330
4V9N|1|BA|A|1331
4V9N|1|BA|G|1332
4V9N|1|BA|C|1333

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BW

50S ribosomal protein L22

Chain BX

50S ribosomal protein L23