IL_4V9O_040

3D structure

PDB id

4V9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

4V9O|1|AA|U|1033

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9O_040 not in the Motif Atlas

Homologous match to IL_5J7L_282

Geometric discrepancy: 0.0872

The information below is about IL_5J7L_282

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

4V9O|1|AA|G|1031
4V9O|1|AA|A|1032
4V9O|1|AA|U|1033
4V9O|1|AA|G|1034
*
4V9O|1|AA|C|1121
4V9O|1|AA|G|1122
4V9O|1|AA|C|1123

Current chains

Chain AA

23S rRNA

Nearby chains

Chain A4

50S ribosomal protein L36

Chain AB

5S ribosomal RNA; 5S rRNA

Chain AM

50S ribosomal protein L16